Field Detail

• ARCHAEA

  public static final java.lang.String ARCHAEA

  See Also:

  Constant Field Values

• BACTERIA

  public static final java.lang.String BACTERIA

  See Also:

  Constant Field Values

• EUKARYOTA

  public static final java.lang.String EUKARYOTA

  See Also:

  Constant Field Values

• CELLULAR_ORGANISMS

  public static final java.lang.String CELLULAR_ORGANISMS

  See Also:

  Constant Field Values

• VIRUSES

  public static final java.lang.String VIRUSES

  See Also:

  Constant Field Values

• X

  public static final java.lang.String X

  See Also:

  Constant Field Values

Constructor Detail

• UniProtTaxonomy

  public UniProtTaxonomy​(java.lang.String line)

• UniProtTaxonomy

  public UniProtTaxonomy​(java.util.List<java.lang.String> lineage,
                         java.lang.String code,
                         java.lang.String common_name,
                         java.lang.String scientific_name,
                         java.lang.String synonym,
                         java.lang.String rank,
                         java.lang.String id)

Method Detail

• copy

  public UniProtTaxonomy copy()

  Creates deep copy for all fields, except lineage.

  Returns:

• getCode

  public java.lang.String getCode()

• getCommonName

  public java.lang.String getCommonName()

• getId

  public java.lang.String getId()

• getLineage

  public java.util.List<java.lang.String> getLineage()

• getRank

  public java.lang.String getRank()

• getScientificName

  public java.lang.String getScientificName()

• getSynonym

  public java.lang.String getSynonym()

• createSpecialFromScientificName

  public static final UniProtTaxonomy createSpecialFromScientificName​(java.lang.String sn)