java.lang.Object
- org.forester.ws.seqdb.EbiDbEntry

All Implemented Interfaces:: SequenceDatabaseEntry

public final class EbiDbEntry
extends java.lang.Object
implements SequenceDatabaseEntry

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`java.lang.Object`	`clone()`
`static SequenceDatabaseEntry`	`createInstanceFromPlainTextForRefSeq(java.util.List<java.lang.String> lines)`
`java.lang.String`	`getAccession()`
`java.util.SortedSet<Annotation>`	`getAnnotations()`
`java.lang.String`	`getChromosome()`
`java.util.SortedSet<Accession>`	`getCrossReferences()`
`java.lang.String`	`getGeneName()`
`java.util.SortedSet<GoTerm>`	`getGoTerms()`
`java.lang.String`	`getMap()`
`MolecularSequence`	`getMolecularSequence()`
`java.lang.String`	`getProvider()`
`java.lang.String`	`getSequenceName()`
`java.lang.String`	`getSequenceSymbol()`
`java.lang.String`	`getTaxonomyIdentifier()`
`java.lang.String`	`getTaxonomyScientificName()`
`boolean`	`isEmpty()`
`void`	`setProvider(java.lang.String provider)`

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Method Detail
  - clone
```
public java.lang.Object clone()
                       throws java.lang.CloneNotSupportedException
```
    Overrides:
    
    clone in class java.lang.Object
    
    Throws:
    
    java.lang.CloneNotSupportedException
  - getAccession
```
public java.lang.String getAccession()
```
    Specified by:
    
    getAccession in interface SequenceDatabaseEntry
  - getAnnotations
```
public java.util.SortedSet<Annotation> getAnnotations()
```
    Specified by:
    
    getAnnotations in interface SequenceDatabaseEntry
  - getChromosome
```
public java.lang.String getChromosome()
```
    Specified by:
    
    getChromosome in interface SequenceDatabaseEntry
  - getCrossReferences
```
public java.util.SortedSet<Accession> getCrossReferences()
```
    Specified by:
    
    getCrossReferences in interface SequenceDatabaseEntry
  - getGeneName
```
public java.lang.String getGeneName()
```
    Specified by:
    
    getGeneName in interface SequenceDatabaseEntry
  - getGoTerms
```
public java.util.SortedSet<GoTerm> getGoTerms()
```
    Specified by:
    
    getGoTerms in interface SequenceDatabaseEntry
  - getMap
```
public java.lang.String getMap()
```
    Specified by:
    
    getMap in interface SequenceDatabaseEntry
  - getProvider
```
public java.lang.String getProvider()
```
    Specified by:
    
    getProvider in interface SequenceDatabaseEntry
  - getSequenceName
```
public java.lang.String getSequenceName()
```
    Specified by:
    
    getSequenceName in interface SequenceDatabaseEntry
  - getSequenceSymbol
```
public java.lang.String getSequenceSymbol()
```
    Specified by:
    
    getSequenceSymbol in interface SequenceDatabaseEntry
  - getTaxonomyIdentifier
```
public java.lang.String getTaxonomyIdentifier()
```
    Specified by:
    
    getTaxonomyIdentifier in interface SequenceDatabaseEntry
  - getTaxonomyScientificName
```
public java.lang.String getTaxonomyScientificName()
```
    Specified by:
    
    getTaxonomyScientificName in interface SequenceDatabaseEntry
  - isEmpty
```
public boolean isEmpty()
```
    Specified by:
    
    isEmpty in interface SequenceDatabaseEntry
  - setProvider
```
public void setProvider(java.lang.String provider)
```
  - createInstanceFromPlainTextForRefSeq
```
public static SequenceDatabaseEntry createInstanceFromPlainTextForRefSeq(java.util.List<java.lang.String> lines)
```
  - getMolecularSequence
```
public MolecularSequence getMolecularSequence()
```
    Specified by:
    
    getMolecularSequence in interface SequenceDatabaseEntry

Class EbiDbEntry

Method Summary

Methods inherited from class java.lang.Object

Method Detail

clone

getAccession

getAnnotations

getChromosome

getCrossReferences

getGeneName

getGoTerms

getMap

getProvider

getSequenceName

getSequenceSymbol

getTaxonomyIdentifier

getTaxonomyScientificName

isEmpty

setProvider

createInstanceFromPlainTextForRefSeq

getMolecularSequence