org.forester.surfacing

Interface Summary
Interface	Description
CombinableDomains
DomainSimilarityCalculator
GenomeWideCombinableDomains
PairwiseDomainSimilarity
PairwiseDomainSimilarityCalculator

Class Summary
Class	Description
AdjactantDirectedBinaryDomainCombination
AdjactantDirectedCombinableDomains
BasicBinaryDomainCombination
BasicCombinableDomains
BasicDomainSimilarityCalculator
BasicGenomeWideCombinableDomains
CombinationsBasedPairwiseDomainSimilarity
CombinationsBasedPairwiseDomainSimilarityCalculator
CountsBasedPairwiseDomainSimilarity
DirectedBinaryDomainCombination
DirectedCombinableDomains
DomainArchitectureBasedGenomeSimilarityCalculator
DomainCountsBasedPairwiseSimilarityCalculator
DomainCountsDifferenceUtil
DomainLengths
DomainLengthsTable
DomainParsimonyCalculator
DomainSimilarity
MappingResults
PairwiseGenomeComparator
ProteinCountsBasedPairwiseDomainSimilarityCalculator
SimpleDomain
SurfacingConstants
SurfacingUtil
TestSurfacing

Enum Summary
Enum	Description
DomainCountsDifferenceUtil.COPY_CALCULATION_MODE
DomainSimilarity.DomainSimilarityScoring
DomainSimilarity.DomainSimilaritySortField
DomainSimilarity.PRINT_OPTION
DomainSimilarityCalculator.Detailedness
DomainSimilarityCalculator.GoAnnotationOutput
GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder

Package org.forester.surfacing