Field Detail

• APTX_VISUALIZATION_REF

  public static final java.lang.String APTX_VISUALIZATION_REF

  See Also:

  Constant Field Values

• DEFAULT_SIZE

  public static final int DEFAULT_SIZE

  See Also:

  Constant Field Values

• FONT_COLOR_REF

  public static final java.lang.String FONT_COLOR_REF

  See Also:

  Constant Field Values

• FONT_COLOR_TYPE

  public static final java.lang.String FONT_COLOR_TYPE

  See Also:

  Constant Field Values

• FONT_REF

  public static final java.lang.String FONT_REF

  See Also:

  Constant Field Values

• FONT_SIZE_REF

  public static final java.lang.String FONT_SIZE_REF

  See Also:

  Constant Field Values

• FONT_SIZE_TYPE

  public static final java.lang.String FONT_SIZE_TYPE

  See Also:

  Constant Field Values

• FONT_STYLE_BOLD

  public static final java.lang.String FONT_STYLE_BOLD

  See Also:

  Constant Field Values

• FONT_STYLE_BOLD_ITALIC

  public static final java.lang.String FONT_STYLE_BOLD_ITALIC

  See Also:

  Constant Field Values

• FONT_STYLE_ITALIC

  public static final java.lang.String FONT_STYLE_ITALIC

  See Also:

  Constant Field Values

• FONT_STYLE_PLAIN

  public static final java.lang.String FONT_STYLE_PLAIN

  See Also:

  Constant Field Values

• FONT_STYLE_REF

  public static final java.lang.String FONT_STYLE_REF

  See Also:

  Constant Field Values

• FONT_STYLE_TYPE

  public static final java.lang.String FONT_STYLE_TYPE

  See Also:

  Constant Field Values

• FONT_TYPE

  public static final java.lang.String FONT_TYPE

  See Also:

  Constant Field Values

• NODE_COLOR_REF

  public static final java.lang.String NODE_COLOR_REF

  See Also:

  Constant Field Values

• NODE_COLOR_TYPE

  public static final java.lang.String NODE_COLOR_TYPE

  See Also:

  Constant Field Values

• NODE_FILL_GRADIENT

  public static final java.lang.String NODE_FILL_GRADIENT

  See Also:

  Constant Field Values

• NODE_FILL_NONE

  public static final java.lang.String NODE_FILL_NONE

  See Also:

  Constant Field Values

• NODE_FILL_SOLID

  public static final java.lang.String NODE_FILL_SOLID

  See Also:

  Constant Field Values

• NODE_FILL_TYPE_REF

  public static final java.lang.String NODE_FILL_TYPE_REF

  See Also:

  Constant Field Values

• NODE_FILL_TYPE_TYPE

  public static final java.lang.String NODE_FILL_TYPE_TYPE

  See Also:

  Constant Field Values

• NODE_SHAPE_CIRCLE

  public static final java.lang.String NODE_SHAPE_CIRCLE

  See Also:

  Constant Field Values

• NODE_SHAPE_RECTANGLE

  public static final java.lang.String NODE_SHAPE_RECTANGLE

  See Also:

  Constant Field Values

• NODE_SHAPE_REF

  public static final java.lang.String NODE_SHAPE_REF

  See Also:

  Constant Field Values

• NODE_SHAPE_TYPE

  public static final java.lang.String NODE_SHAPE_TYPE

  See Also:

  Constant Field Values

• NODE_SIZE_REF

  public static final java.lang.String NODE_SIZE_REF

  See Also:

  Constant Field Values

• NODE_SIZE_TYPE

  public static final java.lang.String NODE_SIZE_TYPE

  See Also:

  Constant Field Values

• NODE_TRANSPARENCY_REF

  public static final java.lang.String NODE_TRANSPARENCY_REF

  See Also:

  Constant Field Values

• NODE_TRANSPARENCY_TYPE

  public static final java.lang.String NODE_TRANSPARENCY_TYPE

  See Also:

  Constant Field Values

Constructor Detail

• NodeVisualData

  public NodeVisualData()

• NodeVisualData

  public NodeVisualData​(java.lang.String font_name,
                        NodeVisualData.FontType font_style,
                        byte font_size,
                        java.awt.Color font_color,
                        NodeVisualData.NodeShape shape,
                        NodeVisualData.NodeFill fill_type,
                        java.awt.Color node_color,
                        float size,
                        float transparency)

Method Detail

• asSimpleText

  public final java.lang.StringBuffer asSimpleText()

  Specified by:

  asSimpleText in interface PhylogenyData

• asText

  public final java.lang.StringBuffer asText()

  Specified by:

  asText in interface PhylogenyData

• copy

  public final PhylogenyData copy()

  Description copied from interface: PhylogenyData
  Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.

  Specified by:

  copy in interface PhylogenyData

  Returns:

  a ~deep~ copy of this PhylogenyData

• getFillType

  public final NodeVisualData.NodeFill getFillType()

• getFont

  public final java.awt.Font getFont()

• getFontColor

  public final java.awt.Color getFontColor()

• getFontName

  public final java.lang.String getFontName()

• getFontSize

  public final byte getFontSize()

• getFontStyle

  public final NodeVisualData.FontType getFontStyle()

• getFontStyleInt

  public final int getFontStyleInt()

• getNodeColor

  public final java.awt.Color getNodeColor()

• getShape

  public final NodeVisualData.NodeShape getShape()

• getSize

  public final float getSize()

• getTransparency

  public final float getTransparency()

• isEmpty

  public final boolean isEmpty()

• isEqual

  public final boolean isEqual​(PhylogenyData data)

  Description copied from interface: PhylogenyData
  Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.

  Specified by:

  isEqual in interface PhylogenyData

  Returns:

  in general, true if and only if all fiels are exactly identical, false otherwise

• parseProperty

  public void parseProperty​(Property prop)

• setFillType

  public final void setFillType​(NodeVisualData.NodeFill fill_type)

• setFillType

  public final void setFillType​(java.lang.String fill)

• setFontColor

  public final void setFontColor​(java.awt.Color font_color)

• setFontName

  public final void setFontName​(java.lang.String font_name)

• setFontSize

  public final void setFontSize​(int font_size)

• setFontStyle

  public final void setFontStyle​(NodeVisualData.FontType font_style)

• setFontStyle

  public final void setFontStyle​(int font_style)

• setFontStyle

  public final void setFontStyle​(java.lang.String font_style)

• setNodeColor

  public final void setNodeColor​(java.awt.Color node_color)

• setShape

  public final void setShape​(NodeVisualData.NodeShape shape)

• setShape

  public final void setShape​(java.lang.String shape)

• setSize

  public final void setSize​(float size)

• setTransparency

  public final void setTransparency​(float transparency)

• toNHX

  public final java.lang.StringBuffer toNHX()

  Specified by:

  toNHX in interface PhylogenyData

• toPhyloXML

  public final void toPhyloXML​(java.io.Writer writer,
                               int level,
                               java.lang.String indentation)
                        throws java.io.IOException

  Description copied from interface: PhylogenyData
  Writes a phyloXML representation of this phylogeny data.

  Specified by:

  toPhyloXML in interface PhylogenyData

  Throws:

  java.io.IOException

• toString

  public final java.lang.String toString()

  Overrides:

  toString in class java.lang.Object