ResampleableMsa

java.lang.Object
- org.forester.msa.BasicMsa
- - org.forester.msa.ResampleableMsa

All Implemented Interfaces:: Msa

public final class ResampleableMsa
extends BasicMsa

Nested Class Summary
- Nested classes/interfaces inherited from interface org.forester.msa.Msa
  Msa.MSA_FORMAT

Constructor Summary

Constructors
Constructor Description

ResampleableMsa(BasicMsa msa)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`char`	`getResidueAt(int row, int col)`
`MolecularSequence`	`getSequence(int row)`
`void`	`resample(int[] resampled_column_positions)`
`void`	`setResidueAt(int row, int col, char residue)`

Methods inherited from class org.forester.msa.BasicMsa
asSequenceList, createInstance, getColumnAt, getIdentifier, getLength, getNumberOfSequences, getSequence, getSequenceAsString, getType, isGapAt, setIdentifier, toString, write

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

ResampleableMsa

public ResampleableMsa(BasicMsa msa)

Method Detail

getResidueAt
```
public final char getResidueAt(int row,
                               int col)
```
Specified by:

getResidueAt in interface Msa

Overrides:

getResidueAt in class BasicMsa

resample

public final void resample(int[] resampled_column_positions)

setResidueAt

public final void setResidueAt(int row,
                               int col,
                               char residue)

Specified by:: setResidueAt in interface Msa
Overrides:: setResidueAt in class BasicMsa

getSequence
```
public MolecularSequence getSequence(int row)
```
Specified by:

getSequence in interface Msa

Overrides:

getSequence in class BasicMsa