java.lang.Object
- org.biojava.nbio.survival.kaplanmeier.figure.SurvFitKM

```
public class SurvFitKM
extends java.lang.Object
```
Ported from survfitKM.S When combining multiple entries with same time not sure how the weighting adds up

Author:

Scooter Willis

Nested Class Summary

Nested Classes
Modifier and Type	Class	Description
`static class`	`SurvFitKM.ConfLower`
`static class`	`SurvFitKM.ConfType`
`static class`	`SurvFitKM.Error`
`static class`	`SurvFitKM.Method`

Constructor Summary

Constructors
Constructor Description

SurvFitKM()

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`static void`	`main(java.lang.String[] args)`
`SurvFitInfo`	`process(java.lang.String datafile, java.lang.String timeColumn, java.lang.String statusColumn, java.lang.String weightColumn, java.lang.String variableColumn, boolean useWeights)`
`SurvFitInfo`	`process(java.lang.String variable, java.util.ArrayList<SurvivalInfo> dataT, boolean useWeighted)`
`SurvFitInfo`	`process(java.lang.String variable, java.util.ArrayList<SurvivalInfo> dataT, SurvFitKM.Method method, SurvFitKM.Error error, boolean seFit, double confInt, SurvFitKM.ConfType confType, SurvFitKM.ConfLower confLower, java.lang.Double startTime, java.lang.Double newTime, boolean useWeighted)`
`SurvFitInfo`	`process(java.util.LinkedHashMap<java.lang.String,java.util.ArrayList<CensorStatus>> survivalData, boolean useWeights)`
`java.util.LinkedHashMap<java.lang.String,StrataInfo>`	`processStrataInfo(java.lang.String variable, java.util.ArrayList<SurvivalInfo> dataT, SurvFitKM.Method method, SurvFitKM.Error error, boolean seFit, double confInt, SurvFitKM.ConfType confType, SurvFitKM.ConfLower confLower, java.lang.Double startTime, java.lang.Double newTime, boolean useWeighted)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- SurvFitKM
```
public SurvFitKM()
```

Method Detail

process

public SurvFitInfo process(java.util.LinkedHashMap<java.lang.String,java.util.ArrayList<CensorStatus>> survivalData,
                           boolean useWeights)
                    throws java.lang.Exception

Parameters:: survivalData -; useWeights -
Returns:
Throws:: java.lang.Exception

process

public SurvFitInfo process(java.lang.String datafile,
                           java.lang.String timeColumn,
                           java.lang.String statusColumn,
                           java.lang.String weightColumn,
                           java.lang.String variableColumn,
                           boolean useWeights)
                    throws java.lang.Exception

Parameters:: datafile -; timeColumn -; statusColumn -; weightColumn -; variableColumn -; useWeights -
Returns:
Throws:: java.lang.Exception

process

public SurvFitInfo process(java.lang.String variable,
                           java.util.ArrayList<SurvivalInfo> dataT,
                           boolean useWeighted)
                    throws java.lang.Exception

Parameters:: variable -; dataT -; useWeighted -
Returns:
Throws:: java.lang.Exception

processStrataInfo

public java.util.LinkedHashMap<java.lang.String,StrataInfo> processStrataInfo(java.lang.String variable,
                                                                                    java.util.ArrayList<SurvivalInfo> dataT,
                                                                                    SurvFitKM.Method method,
                                                                                    SurvFitKM.Error error,
                                                                                    boolean seFit,
                                                                                    double confInt,
                                                                                    SurvFitKM.ConfType confType,
                                                                                    SurvFitKM.ConfLower confLower,
                                                                                    java.lang.Double startTime,
                                                                                    java.lang.Double newTime,
                                                                                    boolean useWeighted)
                                                                             throws java.lang.Exception

Throws:: java.lang.Exception

process

public SurvFitInfo process(java.lang.String variable,
                           java.util.ArrayList<SurvivalInfo> dataT,
                           SurvFitKM.Method method,
                           SurvFitKM.Error error,
                           boolean seFit,
                           double confInt,
                           SurvFitKM.ConfType confType,
                           SurvFitKM.ConfLower confLower,
                           java.lang.Double startTime,
                           java.lang.Double newTime,
                           boolean useWeighted)
                    throws java.lang.Exception

Parameters:: variable -; dataT -; method -; error -; seFit -; confInt -; confType -; confLower -; startTime -; newTime -; useWeighted -
Returns:
Throws:: java.lang.Exception

main

public static void main(java.lang.String[] args)

Parameters:: args - the command line arguments

Class SurvFitKM

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SurvFitKM

Method Detail

process

process

process

processStrataInfo

process

main