java.lang.Object
- org.biojava.nbio.protmod.ProteinModificationImpl

All Implemented Interfaces:

java.lang.Comparable<ProteinModification>, ProteinModification
```
public class ProteinModificationImpl
extends java.lang.Object
implements ProteinModification, java.lang.Comparable<ProteinModification>
```
This class contains information about a specific protein modification.

Since:

3.0

Author:

Jianjiong Gao

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class ProteinModificationImpl.Builder
Uses Builder pattern to build a ProteinModification.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`compareTo(ProteinModification arg0)`
`boolean`	`equals(java.lang.Object obj)`
`ModificationCategory`	`getCategory()`
`ModificationCondition`	`getCondition()`
`java.lang.String`	`getDescription()`
`java.lang.String`	`getFormula()`
`java.lang.String`	`getId()`
`java.util.Set<java.lang.String>`	`getKeywords()`
`ModificationOccurrenceType`	`getOccurrenceType()`
`java.lang.String`	`getPdbccId()`
`java.lang.String`	`getPdbccName()`
`java.lang.String`	`getPsimodId()`
`java.lang.String`	`getPsimodName()`
`java.lang.String`	`getResidId()`
`java.lang.String`	`getResidName()`
`java.lang.String`	`getSystematicName()`
`int`	`hashCode()`
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Method Detail
  - getId
```
public java.lang.String getId()
```
    Specified by:
    
    getId in interface ProteinModification
    
    Returns:
    
    modification id.
  - getPdbccId
```
public java.lang.String getPdbccId()
```
    Specified by:
    
    getPdbccId in interface ProteinModification
    
    Returns:
    
    Protein Data Bank Chemical Component ID.
  - getPdbccName
```
public java.lang.String getPdbccName()
```
    Specified by:
    
    getPdbccName in interface ProteinModification
    
    Returns:
    
    Protein Data Bank Chemical Component name.
  - getResidId
```
public java.lang.String getResidId()
```
    Specified by:
    
    getResidId in interface ProteinModification
    
    Returns:
    
    RESID ID.
  - getResidName
```
public java.lang.String getResidName()
```
    Specified by:
    
    getResidName in interface ProteinModification
    
    Returns:
    
    RESID name.
  - getPsimodId
```
public java.lang.String getPsimodId()
```
    Specified by:
    
    getPsimodId in interface ProteinModification
    
    Returns:
    
    PSI-MOD ID.
  - getPsimodName
```
public java.lang.String getPsimodName()
```
    Specified by:
    
    getPsimodName in interface ProteinModification
    
    Returns:
    
    PSI-MOD name.
  - getSystematicName
```
public java.lang.String getSystematicName()
```
    Specified by:
    
    getSystematicName in interface ProteinModification
    
    Returns:
    
    Systematic name.
  - getDescription
```
public java.lang.String getDescription()
```
    Specified by:
    
    getDescription in interface ProteinModification
    
    Returns:
    
    Description.
  - getKeywords
```
public java.util.Set<java.lang.String> getKeywords()
```
    Specified by:
    
    getKeywords in interface ProteinModification
    
    Returns:
    
    a set of keywords.
  - getCondition
```
public ModificationCondition getCondition()
```
    Specified by:
    
    getCondition in interface ProteinModification
    
    Returns:
    
    ModificationCondition
  - getFormula
```
public java.lang.String getFormula()
```
    Specified by:
    
    getFormula in interface ProteinModification
    
    Returns:
    
    formula of the modified residue.
  - getCategory
```
public ModificationCategory getCategory()
```
    Specified by:
    
    getCategory in interface ProteinModification
    
    Returns:
    
    the modification category.
  - getOccurrenceType
```
public ModificationOccurrenceType getOccurrenceType()
```
    Specified by:
    
    getOccurrenceType in interface ProteinModification
    
    Returns:
    
    the modification occurrence type.
  - toString
```
public java.lang.String toString()
```
    Overrides:
    
    toString in class java.lang.Object
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class java.lang.Object
  - equals
```
public boolean equals(java.lang.Object obj)
```
    Overrides:
    
    equals in class java.lang.Object
  - compareTo
```
public int compareTo(ProteinModification arg0)
```
    Specified by:
    
    compareTo in interface java.lang.Comparable<ProteinModification>

Class ProteinModificationImpl

Nested Class Summary

Method Summary

Methods inherited from class java.lang.Object

Method Detail

getId

getPdbccId

getPdbccName

getResidId

getResidName

getPsimodId

getPsimodName

getSystematicName

getDescription

getKeywords

getCondition

getFormula

getCategory

getOccurrenceType

toString

hashCode

equals

compareTo