java.lang.Object
- org.biojava.nbio.core.sequence.features.Qualifier
- - org.biojava.nbio.core.sequence.features.DBReferenceInfo
  - - org.biojava.nbio.core.sequence.features.FeatureDbReferenceInfo<S,C>

Type Parameters:

S -

C -

All Implemented Interfaces:

FeatureInterface<S,C>
```
public class FeatureDbReferenceInfo<S extends AbstractSequence<C>,C extends Compound>
extends DBReferenceInfo
implements FeatureInterface<S,C>
```
It is DBReferenceInfo which implements FeatureInterface. It allows to keep a dbReferenceInfo as a feature.

Author:

Jacek Grzebyta, Paolo Pavan

Constructor Summary

Constructors
Constructor Description

FeatureDbReferenceInfo(java.lang.String database, java.lang.String id)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addQualifier(java.lang.String key, Qualifier qualifier)`	Add a qualifier
`java.util.List<FeatureInterface<S,C>>`	`getChildrenFeatures()`	Get the features contained by this feature
`java.lang.String`	`getDescription()`	Get the description that can be used to describe the feature
`AbstractLocation`	`getLocations()`	The location(s) of this feature where the location should contain a reference to parent and sequence etc.
`FeatureInterface<S,C>`	`getParentFeature()`	Get the parent feature
`java.util.Map<java.lang.String,java.util.List<Qualifier>>`	`getQualifiers()`	Get the qualifiers for this feature
`java.lang.String`	`getShortDescription()`	Get the short description that can be used to describe the feature
`java.lang.String`	`getSource()`	The source of the feature.
`java.lang.String`	`getType()`	The type of the feature.
`java.lang.Object`	`getUserObject()`
`void`	`setChildrenFeatures(java.util.List<FeatureInterface<S,C>> features)`	Set the children features
`void`	`setDescription(java.lang.String description)`	Set the description that can be used to describe the feature
`void`	`setLocation(AbstractLocation loc)`	The new location for this feature.
`void`	`setParentFeature(FeatureInterface<S,C> feature)`	Set the parent feature
`void`	`setQualifiers(java.util.Map<java.lang.String,java.util.List<Qualifier>> qualifiers)`	Set the qualifiers
`void`	`setShortDescription(java.lang.String shortDescription)`	Set the short description that can be used to describe the feature
`void`	`setSource(java.lang.String source)`	Change the source of the FeatureInterface.
`void`	`setType(java.lang.String type)`	Change the type of this feature.
`void`	`setUserObject(java.lang.Object userObject)`

Methods inherited from class org.biojava.nbio.core.sequence.features.DBReferenceInfo
addProperty, getDatabase, getId, getProperties, setDatabase, setId, setProperties, toString

Methods inherited from class org.biojava.nbio.core.sequence.features.Qualifier
getName, getValue, needsQuotes, setName, setNeedsQuotes, setValue

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - FeatureDbReferenceInfo
```
public FeatureDbReferenceInfo(java.lang.String database,
                              java.lang.String id)
```
- Method Detail
  - getShortDescription
```
public java.lang.String getShortDescription()
```
    Description copied from interface: FeatureInterface
    
    Get the short description that can be used to describe the feature
    
    Specified by:
    
    getShortDescription in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Returns:
  - setShortDescription
```
public void setShortDescription(java.lang.String shortDescription)
```
    Description copied from interface: FeatureInterface
    
    Set the short description that can be used to describe the feature
    
    Specified by:
    
    setShortDescription in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
  - getDescription
```
public java.lang.String getDescription()
```
    Description copied from interface: FeatureInterface
    
    Get the description that can be used to describe the feature
    
    Specified by:
    
    getDescription in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Returns:
  - setDescription
```
public void setDescription(java.lang.String description)
```
    Description copied from interface: FeatureInterface
    
    Set the description that can be used to describe the feature
    
    Specified by:
    
    setDescription in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
  - getLocations
```
public AbstractLocation getLocations()
```
    Description copied from interface: FeatureInterface
    
    The location(s) of this feature where the location should contain a reference to parent and sequence etc.
    The location may be complicated, or simply a range. The annotation is assumed to apply to all the region contained within the location.
    
    Specified by:
    
    getLocations in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Returns:
    
    a Location anchoring this feature
  - setLocation
```
public void setLocation(AbstractLocation loc)
```
    Description copied from interface: FeatureInterface
    
    The new location for this feature.
    The location may be complicated or simply a range. The annotation is assumed to apply to the entire region contained within the location. Any values returned from methods that rely on the old location must not be affected.
    
    Specified by:
    
    setLocation in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Parameters:
    
    loc - the new Location for this feature
  - getType
```
public java.lang.String getType()
```
    Description copied from interface: FeatureInterface
    
    The type of the feature.
    
    Specified by:
    
    getType in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Returns:
    
    the type of this sequence
  - setType
```
public void setType(java.lang.String type)
```
    Description copied from interface: FeatureInterface
    
    Change the type of this feature.
    
    Specified by:
    
    setType in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Parameters:
    
    type - new type String
  - getSource
```
public java.lang.String getSource()
```
    Description copied from interface: FeatureInterface
    
    The source of the feature. This may be a program or process.
    
    Specified by:
    
    getSource in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Returns:
    
    the source, or generator
  - setSource
```
public void setSource(java.lang.String source)
```
    Description copied from interface: FeatureInterface
    
    Change the source of the FeatureInterface.
    
    Specified by:
    
    setSource in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Parameters:
    
    source - the new source String
  - setParentFeature
```
public void setParentFeature(FeatureInterface<S,C> feature)
```
    Description copied from interface: FeatureInterface
    
    Set the parent feature
    
    Specified by:
    
    setParentFeature in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
  - getParentFeature
```
public FeatureInterface<S,C> getParentFeature()
```
    Description copied from interface: FeatureInterface
    
    Get the parent feature
    
    Specified by:
    
    getParentFeature in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Returns:
  - getChildrenFeatures
```
public java.util.List<FeatureInterface<S,C>> getChildrenFeatures()
```
    Description copied from interface: FeatureInterface
    
    Get the features contained by this feature
    
    Specified by:
    
    getChildrenFeatures in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Returns:
  - setChildrenFeatures
```
public void setChildrenFeatures(java.util.List<FeatureInterface<S,C>> features)
```
    Description copied from interface: FeatureInterface
    
    Set the children features
    
    Specified by:
    
    setChildrenFeatures in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
  - getUserObject
```
public java.lang.Object getUserObject()
```
    Specified by:
    
    getUserObject in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Returns:
    
    the userObject
  - setUserObject
```
public void setUserObject(java.lang.Object userObject)
```
    Specified by:
    
    setUserObject in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Parameters:
    
    userObject - the userObject to set
  - getQualifiers
```
public java.util.Map<java.lang.String,java.util.List<Qualifier>> getQualifiers()
```
    Description copied from interface: FeatureInterface
    
    Get the qualifiers for this feature
    
    Specified by:
    
    getQualifiers in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
    
    Returns:
  - setQualifiers
```
public void setQualifiers(java.util.Map<java.lang.String,java.util.List<Qualifier>> qualifiers)
```
    Description copied from interface: FeatureInterface
    
    Set the qualifiers
    
    Specified by:
    
    setQualifiers in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>
  - addQualifier
```
public void addQualifier(java.lang.String key,
                         Qualifier qualifier)
```
    Description copied from interface: FeatureInterface
    
    Add a qualifier
    
    Specified by:
    
    addQualifier in interface FeatureInterface<S extends AbstractSequence<C>,C extends Compound>

Class FeatureDbReferenceInfo<S extends AbstractSequence<C>,​C extends Compound>

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.core.sequence.features.DBReferenceInfo

Methods inherited from class org.biojava.nbio.core.sequence.features.Qualifier

Methods inherited from class java.lang.Object

Constructor Detail

FeatureDbReferenceInfo

Method Detail

getShortDescription

setShortDescription

getDescription

setDescription

getLocations

setLocation

getType

setType

getSource

setSource

setParentFeature

getParentFeature

getChildrenFeatures

setChildrenFeatures

getUserObject

setUserObject

getQualifiers

setQualifiers

addQualifier

Class FeatureDbReferenceInfo<S extends AbstractSequence<C>,C extends Compound>