Package org.snpsift.gwasCatalog

Class GwasCatalogFileIterator

java.lang.Object
org.snpeff.fileIterator.FileIterator<GwasCatalogEntry>
org.snpeff.fileIterator.LineClassFileIterator<GwasCatalogEntry>
org.snpsift.gwasCatalog.GwasCatalogFileIterator
All Implemented Interfaces:
Iterable<GwasCatalogEntry>, Iterator<GwasCatalogEntry>
public class GwasCatalogFileIterator extends org.snpeff.fileIterator.LineClassFileIterator<GwasCatalogEntry>
Iterate on each line of a GWAS catalog (TXT, tab separated format)
Author:
pcingola

  • Field Summary

    Fields inherited from class org.snpeff.fileIterator.LineClassFileIterator

    clazz, debug, FIELD_NAME_SEPARATOR, fieldByName, fieldNames, fieldStr, separator

    Fields inherited from class org.snpeff.fileIterator.FileIterator

    autoClose, countNewLineChars, fileName, fileSize, line, lineNum, next, nextLine, reader, verbose

  • Constructor Summary

    Constructors
    Constructor
    Description
    GwasCatalogFileIterator(String fileName)
     

  • Method Summary

    Methods inherited from class org.snpeff.fileIterator.LineClassFileIterator

    createObject, fieldMap, iterator, readNext, setSeparator

    Methods inherited from class org.snpeff.fileIterator.FileIterator

    close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, init, isDebug, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

    Methods inherited from interface java.lang.Iterable

    forEach, spliterator

    Methods inherited from interface java.util.Iterator

    forEachRemaining

  • Constructor Details

    • GwasCatalogFileIterator

      public GwasCatalogFileIterator(String fileName)