Uses of Class org.snpsift.annotate.AnnotateVcfDb (SnpSift 5.2 API)

Packages that use AnnotateVcfDb

Package

Description

org.snpsift.annotate

Uses of AnnotateVcfDb in org.snpsift

Fields in org.snpsift declared as AnnotateVcfDb

Modifier and Type

Field

Description

protected AnnotateVcfDb

SnpSiftCmdAnnotate.annotateDb
Uses of AnnotateVcfDb in org.snpsift.annotate

Subclasses of AnnotateVcfDb in org.snpsift.annotate

Modifier and Type

Class

Description

class

AnnotateVcfDbMem

Annotate using a VCF "database" Note: Reads and loads the whole VCF file into memory

class

AnnotateVcfDbSorted

Annotate using a VCF "database" Note: Assumes that the VCF database file is sorted.

class

AnnotateVcfDbTabix

Annotate using a tabix indexed VCF "database"